PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0028s0090.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 335aa    MW: 36232.9 Da    PI: 10.1652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0028s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.1e-31263320359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh 
  Kaladp0028s0090.1.p 263 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDEPTMLIVTYEGEHNHA 320
                          99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-16214259IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.1E-32249320IPR003657WRKY domain
PROSITE profilePS5081130.044256322IPR003657WRKY domain
SuperFamilySSF1182903.4E-26258320IPR003657WRKY domain
SMARTSM007744.8E-37261321IPR003657WRKY domain
PfamPF031061.7E-26263319IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAVDLMTRYN SLSSKLEDPA VKEAASGLES VGKLIRLLSQ QPPPQQQKFS SSTAADRAEE  60
DYNAVANDAV LKFNKVITLL SSRTRTGHAR FRRAPVPQSA PATSFFKKEP ESLDGGSSAA  120
ANLCRVYRAT PLQQIPPPPK QSQSGRHFQQ IPRSANESTT TINFSNSSVP SSFFSSLTGD  180
SVEDSVKQIS SSSAFQSGSC LSAKPPLSSS SSFKRKCSSS DVAAGKCGES SANCHCSKRR  240
KMRMKRVVRV PAISMKLADI PPDDFSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE  300
RAVDEPTMLI VTYEGEHNHA LTVAETSGLI LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21249321273WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238914.11e-125PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-82WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLM5W0561e-124M5W056_PRUPE; Uncharacterized protein
STRINGPOPTR_0007s10670.11e-116(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.14e-49WRKY DNA-binding protein 15